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duminică, 5 august 2012

A Better Understanding Of Rhomboid Proteases May Lead To New Therapies For Malaria And Other Parasitic Diseases

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Main Category: Tropical Diseases
Also Included In: Infectious Diseases / Bacteria / Viruses;  Biology / Biochemistry
Article Date: 05 Aug 2012 - 0:00 PDT Current ratings for:
A Better Understanding Of Rhomboid Proteases May Lead To New Therapies For Malaria And Other Parasitic Diseases
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Johns Hopkins scientists have decoded for the first time the "stability blueprint" of an enzyme that resides in a cell's membrane, mapping which parts of the enzyme are important for its shape and function. These studies, published in advance online in Structure and in Nature Chemical Biology, could eventually lead to the development of drugs to treat malaria and other parasitic diseases.

"[It's] the first time we really understand the architectural logic behind the structure of the enzyme," says Sinisa Urban, Ph.D., an associate professor of molecular biology and genetics at the Johns Hopkins University School of Medicine and an investigator at the Howard Hughes Medical Institute, who with his team has unlocked the mysteries of a special class of enzymes called rhomboid proteases.

Rhomboid proteases are present in many different organisms, and are a unique type of enzyme that resides in the cell's membrane where they cut proteins. Previously Urban and his colleagues demonstrated that the rhomboid enzyme is critical for Plasmodium falciparum, the parasite that causes malaria, to successfully invade red blood cells, a step that ultimately leads to infection. Urban says understanding the stability of rhomboid protease shape may impact the design of enzyme inhibitors - potential drugs. "These enzymes have no selective inhibitors," says Urban. "We really need to understand how [the enzyme] works - is it as stiff as a rock, or is it more gummy, like Jell-O?"

One challenge of studying rhomboid enzymes is that they are surrounded by membranes, making them more difficult to manipulate and work with. To address this, Urban's research team turned to a technique known as thermal light scattering, which heats enzyme samples to progressively higher temperatures while measuring the amount of light bouncing back off of the molecules. Enzymes that have broken from their normal shape will scatter light differently, and the temperature at which this occurs (in effect, the breaking point of the enzyme) indicates the inherent stability of the enzyme.

The researchers first precisely measured the stability of the rhomboid enzyme from E. coli bacteria. Surprisingly, says Urban, the rhomboid enzyme was more "Jell-O-like" than other membrane proteins with similar shapes. He guesses that this "jiggly shape" may help rhomboid proteases interact with other proteins that it cuts. To find which parts of the enzyme are most important for maintaining shape and which parts are more crucial for function, the researchers then made and tested 150 differently altered versions of the enzyme. They found four main regions important for maintaining shape and at least two regions important for function.

The researchers also took advantage of computer simulations to test their ideas about how the enzyme functions. Using a computer program model of the enzyme, they programmed in features of its natural membrane environment, which consists mostly of fats and is very limited in water. The computer program then simulated how this environment might influence the enzyme. Researchers found that the enzyme contains a special internal pocket for holding water molecules - a great advantage in its natural, water-limiting environment.

"We're very excited about our findings and are especially curious about the versions of the enzyme that lost function despite no obvious change in stability or shape," says Urban. Ultimately he hopes that a better understanding of rhomboid proteases will lead to new therapies for treating malaria and other parasitic diseases.

Article adapted by Medical News Today from original press release. Click 'references' tab above for source.
Visit our tropical diseases section for the latest news on this subject. These studies were supported by the Howard Hughes Medical Institute, a National Institute of General Medical Sciences grant (GM079223), a National Institute of Allergy and Infectious Diseases grant (AI066025), the National Science Foundation (NSF) and the David and Lucile Packard Foundation.
Other researchers who participated in this study include Rosanna Baker, Yanzi Zhou, Syed Moin and Yingkai Zhang.
Johns Hopkins Medical Institutions Please use one of the following formats to cite this article in your essay, paper or report:

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'A Better Understanding Of Rhomboid Proteases May Lead To New Therapies For Malaria And Other Parasitic Diseases'

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luni, 12 decembrie 2011

Improved Understanding Of Mechanisms That Confer Virulence To E.coli-Type Bacteria

Main Category: Public Health
Article Date: 12 Dec 2011 - 1:00 PST

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A team headed by scientists from the Institute for Research in Biomedicine (IRB Barcelona) reports how the protein Ler, which is found in pathogenic bacteria, interacts with certain DNA sequences, thereby activating numerous genes responsible for virulence, which bacteria then exploit to infect human cells. Ler is present in pathogenic Escherichia coli (E.coli) strains, such as the one that caused a deadly infectious outbreak in Germany last May. The study has been published in the scientific journal PloS Pathogens.

The researchers have solved the three-dimensional structure of a key region of the DNA-protein complex. Knowledge about the structures that control the activity of genes associated with virulence and resistance to antibiotics is crucial to understand the molecular mechanisms that regulate bacterial pathogenicity and to pave the way for alternative treatments to conventional antibiotics. According to Jesús García, research associate in the IRB Barcelona group headed by Miquel Pons, researcher at IRB Barcelona and professor of the UB, "a strategy based on selective regulatory systems for genes responsible for virulence is particularly attractive because it could potentially minimize the adverse effects on our bacterial flora and reduce the selective pressure for the development of antibiotic resistance in bacteria".

Horizontal gene transfer

Many of the genes responsible for pathogenic bacteria virulence and resistance to antibiotics have been acquired through processes such as horizontal gene transfer (HGT). By means of this mechanism, bacteria incorporate genetic material from external sources such as bacteria or phages (viruses that affect bacteria). The correct regulation of HGT genes, in other words silencing when not required and coordinated activation to produce a beneficial effect, is crucial for the success of bacteria.

"The resolved structure has allowed us to understand the way in which Ler recognizes its DNA binding sites. Ler does not recognize specific sequences but local DNA structures. In our study we also tested whether this recognition mode is used by other proteins of the same family, such as H-NS", explains García. The Ler and H-NS proteins play a critical role in the regulation of genes acquired through HGT in pathogenic E. coli strains.

Article adapted by Medical News Today from original press release. Click 'references' tab above for source.
Visit our public health section for the latest news on this subject. The study forms part of Tiago N. Cordeiro’s doctoral thesis and has involved researchers from the Institute for Bioengineering of Catalonia (IBEC), the University of Barcelona (UB) and the Max Planck Institute for Biophysical Chemistry in Göttingen.
Indirect DNA Readout by an H-NS Related Protein: Structure of the DNA Complex of the C-Terminal Domain of Ler.
Tiago N. Cordeiro; Holger Schmidt; Cristina Madrid; Antonio Juárez; Pau Bernadó; Christian Griesinger; Jesus García; Miquel Pons.
PLoS Pathog 7(11): e1002380. doi:10.1371/journal.ppat.1002380
Institute for Research in Biomedicine (IRB Barcelona) Please use one of the following formats to cite this article in your essay, paper or report:

MLA

Institute for Research in Biomedicine (IRB Barcelo. "Improved Understanding Of Mechanisms That Confer Virulence To E.coli-Type Bacteria." Medical News Today. MediLexicon, Intl., 12 Dec. 2011. Web.
12 Dec. 2011. APA

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Please send any medical news or health news press releases to:

Note: Any medical information published on this website is not intended as a substitute for informed medical advice and you should not take any action before consulting with a health care professional. For more information, please read our terms and conditions.



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